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1

PROTEIN FAMILIES AND THEIR EVOLUTION—A STRUCTURAL PERSPECTIVE

Orengo, Christine A., Thornton, Janet M.

Journal:

Annual Review of Biochemistry

Year:

2005

Language:

english

File:

PDF, 985 KB

english, 2005

2

Low-Density Lipoprotein Receptor Gene Familial Hypercholesterolemia Variant Database: Update and Pathological Assessment

Ebele Usifo, Sarah E. A. Leigh, Ros A. Whittall, Nicholas Lench, Alison Taylor, Corin Yeats, Christine A. Orengo, Andrew C. R. Martin, Jacopo Celli, Steve E. Humphries

Journal:

Annals of Human Genetics

Year:

2012

Language:

english

File:

PDF, 1.19 MB

english, 2012

3

PainNetworks: A web-based resource for the visualisation of pain-related genes in the context of their network associations

Perkins, James R., Lees, Jonathan, Antunes-Martins, Ana, Diboun, Ilhem, McMahon, Stephen B., Bennett, David L.H., Orengo, Christine

Journal:

Year:

2013

Language:

english

File:

PDF, 4.08 MB

english, 2013

4

Trimethylaminuria and a human FMO3 mutation database

Diana Hernandez, Sarah Addou, David Lee, Christine Orengo, Elizabeth A. Shephard, Ian R. Phillips

Journal:

Year:

2003

Language:

english

File:

PDF, 133 KB

english, 2003

5

Alpha plus beta folds revisited: some favoured motifs

Christine A Orengo, Janet M Thornton

Journal:

Year:

1993

Language:

english

File:

PDF, 8.88 MB

english, 1993

6

From protein structure to function

Christine A Orengo, Annabel E Todd, Janet M Thornton

Journal:

Current Opinion in Structural Biology

Year:

1999

Language:

english

File:

PDF, 1.06 MB

english, 1999

7

Microarray analysis after RNA amplification can detect pronounced differences in gene expression using limma

Ilhem Diboun, Lorenz Wernisch, Christine Anne Orengo, Martin Koltzenburg

Journal:

Year:

2006

Language:

english

File:

PDF, 754 KB

english, 2006

8

Residue mutations and their impact on protein structure and function: detecting beneficial and pathogenic changes

Studer, Romain A., Dessailly, Benoit H., Orengo, Christine A.

Journal:

Biochemical Journal

Year:

2013

Language:

english

File:

PDF, 846 KB

english, 2013

9

Protein Families (Relating Protein Sequence, Structure, and Function) || FrontMatter

Orengo, Christine, Bateman, Alex

Year:

2013

Language:

english

File:

PDF, 116 KB

english, 2013

10

Choosing the Best Enzyme Complex Structure Made Easy

Das, Sayoni, Orengo, Christine

Journal:

Year:

2018

Language:

english

File:

PDF, 624 KB

english, 2018

11

Perinatal Intimate Partner Violence

Hahn, Christine K., Gilmore, Amanda K., Aguayo, Rosaura Orengo, Rheingold, Alyssa A.

Journal:

Obstetrics and Gynecology Clinics of North America

Year:

2018

Language:

english

File:

PDF, 236 KB

english, 2018

12

An overview of comparative modelling and resources dedicated to large-scale modelling of genome sequences

Lam, Su Datt, Das, Sayoni, Sillitoe, Ian, Orengo, Christine

Journal:

Acta Crystallographica Section D Structural Biology

Year:

2017

Language:

english

File:

PDF, 613 KB

english, 2017

13

Dynamic changes in the brain protein interaction network correlates with progression of AÎ²42 pathology in Drosophila

Scholes, Harry M., Cryar, Adam, Kerr, Fiona, Sutherland, David, Gethings, Lee A., Vissers, Johannes P. C., Lees, Jonathan G., Orengo, Christine A., Partridge, Linda, Thalassinos, Konstantinos

Journal:

Scientific Reports

Year:

2020

File:

PDF, 3.59 MB

2020

14

Contemporary approaches to protein structure classification

Mark B. Swindells, Christine A. Orengo, David T. Jones, E. Gail Hutchinson, Janet M. Thornton

Journal:

Year:

1998

Language:

english

File:

PDF, 756 KB

english, 1998

15

The CATH protein family database: A resource for structural and functional annotation of genomes

Christine A. Orengo, James E. Bray, Daniel W. A. Buchan, Andrew Harrison, David Lee, Frances M. G. Pearl, Ian Sillitoe, Annabel E. Todd, Janet M. Thornton

Journal:

Year:

2002

Language:

english

File:

PDF, 1.14 MB

english, 2002

16

Induction of epidermal hyperplasia, hyperkeratosis, and papillomas in transgenic mice by a targeted v-Ha-ras oncogene

David A. Greenhalgh, Joseph A. Rothnagel, Maria I. Quintanilla, Christine C. Orengo, Todd A. Gagne, Donnie S. Bundman, Mary A. Longley, Dennis R. Roop

Journal:

Molecular Carcinogenesis

Year:

1993

Language:

english

File:

PDF, 1.32 MB

english, 1993

17

A protein structure comparison methodology

Nigel P. Brown, Christine A. Orengo, William R. Taylor

Journal:

Computers & Chemistry

Year:

1996

Language:

english

File:

PDF, 2.33 MB

english, 1996

18

Comparison of dorsal root ganglion gene expression in rat models of traumatic and HIV-associated neuropathic pain

Klio Maratou, Victoria C.J. Wallace, Fauzia S. Hasnie, Kenji Okuse, Ramine Hosseini, Nipurna Jina, Julie Blackbeard, Timothy Pheby, Christine Orengo, Anthony H. Dickenson, Stephen B. McMahon, Andrew S

Journal:

European Journal of Pain

Year:

2009

Language:

english

File:

PDF, 1.04 MB

english, 2009

19

Assessment of protein domain fusions in human protein interaction networks prediction: Application to the human kinetochore model

Ian Morilla, Jon G. Lees, Adam J. Reid, Christine Orengo, Juan A.G. Ranea

Journal:

New Biotechnology

Year:

2010

Language:

english

File:

PDF, 713 KB

english, 2010

20

Survey of current protein family databases and their application in comparative, structural and functional genomics

Oliver Redfern, Alastair Grant, Michael Maibaum, Christine Orengo

Journal:

Journal of Chromatography B

Year:

2005

Language:

english

File:

PDF, 312 KB

english, 2005

21

The kinetics of the reactions of low spin ferric haem undecapeptide with hydrogen peroxide

G.Marius Clore, Michael R. Hollaway, Christine Orengo, Jim Peterson, Michael T. Wilson

Journal:

Inorganica Chimica Acta

Year:

1981

Language:

english

File:

PDF, 577 KB

english, 1981

22

Evolution of protein function, from a structural perspective

Annabelle E Todd, Christine A Orengo, Janet M Thornton

Journal:

Current Opinion in Chemical Biology

Year:

1999

Language:

english

File:

PDF, 126 KB

english, 1999

23

Characterization of pathogenic germline mutations in human Protein Kinases

Jose MG Izarzugaza, Lisa EM Hopcroft, Anja Baresic, Christine A Orengo, Andrew CR Martin, Alfonso Valencia

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 736 KB

english, 2011

24

1,000 structures and more from the MCSG

David Lee, Tjaart AP de Beer, Roman A Laskowski, Janet M Thornton, Christine A Orengo

Journal:

BMC Structural Biology

Year:

2011

Language:

english

File:

PDF, 1.44 MB

english, 2011

25

Multiple protein structure alignment

William R. Taylor, Tomas P. Flores, Christine A. Orengo

Journal:

Protein Science

Year:

1994

Language:

english

File:

PDF, 1.19 MB

english, 1994

26

Use of structure comparison methods for the refinement of protein structure predictions. I. Identifying the structural family of a protein from low-resolution models

Xavier de la Cruz, Ian Sillitoe, Christine Orengo

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2002

Language:

english

File:

PDF, 417 KB

english, 2002

27

Identification and distribution of protein families in 120 completed genomes using Gene3D

David Lee, Alastair Grant, Russell L. Marsden, Christine Orengo

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 515 KB

english, 2005

28

Cancer-associated mutations are preferentially distributed in protein kinase functional sites

Jose M. G. Izarzugaza, Oliver C. Redfern, Christine A. Orengo, Alfonso Valencia

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 391 KB

english, 2009

29

Fast structure alignment for protein databank searching

Christine A. Orengo, Nigel P. Brown, William R. Taylor

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1992

Language:

english

File:

PDF, 1.85 MB

english, 1992

30

Protein Superfamily Evolution and the Last Universal Common Ancestor (LUCA)

Juan A. G. Ranea, Antonio Sillero, Janet M. Thornton, Christine A. Orengo

Journal:

Journal of Molecular Evolution

Year:

2006

Language:

english

File:

PDF, 460 KB

english, 2006

31

Structural genomics is the largest contributor of novel structural leverage

Rajesh Nair, Jinfeng Liu, Ta-Tsen Soong, Thomas B. Acton, John K. Everett, Andrei Kouranov, Andras Fiser, Adam Godzik, Lukasz Jaroszewski, Christine Orengo, Gaetano T. Montelione, Burkhard Rost

Journal:

Journal of Structural and Functional Genomics

Year:

2009

Language:

english

File:

PDF, 489 KB

english, 2009

32

Specialty Clinics for the Dermatologic Care of Solid-Organ Transplant Recipients

Leslie J. Christenson, Alexandra Geusau, Carlos Ferrandiz, Christine D. Brown, Claas Ulrich, Eggert Stockfleth, Daniel Berg, Ida Orengo, James C. Shaw, John A. Carucci PHD, Sylvie Euvrard, Theresa Pac

Journal:

Dermatologic Surgery

Year:

2004

Language:

english

File:

PDF, 97 KB

english, 2004

33

Recurrence of a binding motif?

Swindells, Mark B., Orengo, Christine A., Jones, David T., Pearl, Laurence H., Thornton, Janet M.

Journal:

Year:

1993

File:

PDF, 240 KB

1993

34

Shared structural motif in proteins

Swindells, Mark B., Orengo, Christine A., Jones, David T., Pearl, Laurence H., Thornton, Janet M.

Journal:

Year:

1993

File:

PDF, 163 KB

1993

35

Protein superfamilles and domain superfolds

Orengo, Christine A., Jones, David T., Thornton, Janet M.

Journal:

Year:

1994

File:

PDF, 565 KB

1994

36

10.1038/80791

Thornton, Janet M., Todd, Annabel E., Milburn, Duncan, Borkakoti, Neera, Orengo, Christine A.

Journal:

Nature Immunology

Year:

2000

Language:

english

File:

PDF, 67 KB

english, 2000

37

10.1038/80784

Thornton, Janet M., Todd, Annabel E., Milburn, Duncan, Borkakoti, Neera, Orengo, Christine A.

Journal:

Natural Structural Biology

Year:

2000

Language:

english

File:

PDF, 445 KB

english, 2000

38

Predicting protein function from sequence and structure

Lee, David, Redfern, Oliver, Orengo, Christine

Journal:

Nature Reviews Molecular Cell Biology

Year:

2007

Language:

english

File:

PDF, 983 KB

english, 2007

39

Target Selection and Determination of Function in Structural Genomics

James Watson, Annabel Todd, James Bray, Roman Laskowski, Aled Edwards, Andrzej Joachimiak, Christine Orengo, Janet Thornton

Journal:

Year:

2003

Language:

english

File:

PDF, 236 KB

english, 2003

40

The CATH extended protein-family database: Providing structural annotations for genome sequences

Frances M.G. Pearl, David Lee, James E. Bray, Daniel W.A. Buchan, Adrian J. Shepherd, Christine A. Orengo

Journal:

Protein Science

Year:

2002

Language:

english

File:

PDF, 417 KB

english, 2002

41

CORA—Topological fingerprints for protein structural families

Christine Anne Orengo

Journal:

Protein Science

Year:

1999

Language:

english

File:

PDF, 3.24 MB

english, 1999

42

Genome analysis: Assigning protein coding regions to three-dimensional structures

Asaf A. Salamov, Makiko Suwa, Christine A. Orengo, Mark B. Swindells

Journal:

Protein Science

Year:

1999

Language:

english

File:

PDF, 1.90 MB

english, 1999

43

Yeast cytochrome c oxidase: A model system to study mitochondrial forms of the haem–copper oxidase superfamily

Amandine Maréchal, Brigitte Meunier, David Lee, Christine Orengo, Peter R. Rich

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

2012

Language:

english

File:

PDF, 1.09 MB

english, 2012

44

Sequences and topology: Genes and structures in context

Peer Bork, Christine A Orengo

Journal:

Current Opinion in Structural Biology

Year:

2004

Language:

english

File:

PDF, 55 KB

english, 2004

45

Exploring the structure and function paradigm

Oliver C. Redfern, Benoit Dessailly, Christine A. Orengo

Journal:

Current Opinion in Structural Biology

Year:

2008

Language:

english

File:

PDF, 1.08 MB

english, 2008

46

Exploiting structural classifications for function prediction: towards a domain grammar for protein function

Benoît H Dessailly, Oliver C Redfern, Alison Cuff, Christine A Orengo

Journal:

Current Opinion in Structural Biology

Year:

2009

Language:

english

File:

PDF, 1.77 MB

english, 2009

47

Structural insights into multi-protein communication systems

Christine Orengo, James Whisstock

Journal:

Current Opinion in Structural Biology

Year:

2012

Language:

english

File:

PDF, 159 KB

english, 2012

48

PSI-2: Structural Genomics to Cover Protein Domain Family Space

Benoît H. Dessailly, Rajesh Nair, Lukasz Jaroszewski, J. Eduardo Fajardo, Andrei Kouranov, David Lee, Andras Fiser, Adam Godzik, Burkhard Rost, Christine Orengo

Journal:

Year:

2009

Language:

english

File:

PDF, 546 KB

english, 2009

49

The CATH Hierarchy Revisited—Structural Divergence in Domain Superfamilies and the Continuity of Fold Space

Alison Cuff, Oliver C. Redfern, Lesley Greene, Ian Sillitoe, Tony Lewis, Mark Dibley, Adam Reid, Frances Pearl, Tim Dallman, Annabel Todd, Richard Garratt, Janet Thornton, Christine Orengo

Journal:

Year:

2009

Language:

english

File:

PDF, 814 KB

english, 2009

50

Detailed Analysis of Function Divergence in a Large and Diverse Domain Superfamily: Toward a Refined Protocol of Function Classification

Benoit H. Dessailly, Oliver C. Redfern, Alison L. Cuff, Christine A. Orengo

Journal:

Year:

2010

Language:

english

File:

PDF, 2.64 MB

english, 2010